Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916578.1_cds_XP_016466293.1_59161
CDS Infomation

[gene=LOC107789037] [db_xref=GeneID:107789037] [protein=probable indole-3-acetic acid-amido synthetase GH3.1] [protein_id=XP_016466293.1] [location=join(26323..26645,26838..26939,27292..27806,27918..28789)] [gbkey=CDS]
Sequence

ATGGCCATAGCTACTAGTACTGTTTCATCTCCTCTTGGCCCTCCAGCATGTGAGAAGGAT
GCTAAGGCCCTTCAGTTCATTGAGGAGATGACCAGAAACGTTGATTCAGTCCAAAAAAAA
GTCTTGGCTGAAATATTAAGTCGAAATGCCAATACTGAGTATCTTCAAAGATTTAAGCTT
CGTGGTGGTACTGACCGTGACACATTCAAGTCCAAAGTACCAGTTGTCACATATGAGGAA
ATCCAACCCGATATTCAGCGTATTGCCAATGGTGATCGTTCTCCAATTTTCTCATCTCAT
CCCATCTCCGAGTTCCTCACCAGCTCGGGGACATCTGCTGGTGAGAGAAAGCTGATGCCC
ACAATTCAAGAGGAGTTAGACCGGAGACAGCTTTTGTACAGTCTTCTAATGCCCGTCATG
AATCTGTATGTACCTGGTCTAGACAAAGGGAAGGGCTTGTACTTCCTATTTATAAAGGCA
GAAACCAAGACTCCTGGTGGGCTACTTGCAAGACCAGTCCTAACAAGTTACTACAAAAGT
GATCAGTTCAAGACTAGGCCATACGATCCATACAATGTGTATACAAGTCCTAACGAGGCT
ATTCTCTGTGTCGACTCTTTCCAGAGCATGTATACTCAAATGCTCTGTGGCCTTCTCATG
AGAGAACAGGTCCTTCGAGTAGGGGCTGTTTTTGCCTCTGGTCTACTTCGTGCCATTCGT
TTTCTTCAAATCAATTGGCAGACACTTGTTAAGGATATCGCATTTGGGACACTAAACACT
AGAGTTTCTGACCCTTCTATCAAGGAATGCATGTCCAAAATACTTAAACCAAATCCTGAA
CTTGCTGAGTTCATTATCAAGGAGTGCGAAGGCCAGAATTGGGAAGGGATCATTACTAGA
ATTTGGCCAAATACAAAGTACTTGGATGTGATTGTGACAGGTGCAATGGCTCAATACATC
CCTACACTAGACTATTATAGTGGTGGTTTACCAAAGGCTTGTACCATGTATGCATCTTCC
GAGTGTTATTTTGGCCTTAATTTGAACCCAATGTGCAAACCATCTGAAGTATGTTACACC
ATAATGCCTAATATGTGCTACTGTGAGTTTATCCCTCATGATCCAGTCAACCCTGCAACG
ATTTCTCGTGACTCACCACCCCGTCTCGTGGACCTGGCCGATGTGGAATTGGGAAAAGAA
TACGAGCTCGTGATCACAACCTACGCTGGATTATGTCGTTACAGAGTTGGTGACATACTC
CAGGTCACTGGGTTTCACAACTCGGCTCCTCAGTTCAAATTCGTAAGGAGGAAGAATGTG
CTATTGAGCATTGATTCGGACAAAACTGATGAGGCCGAGTTGCAAAATGCAGTTGAGAAC
GCTACGCAAATTTTGCGACCATATGACACAAGTGTGGTTGAATACACTAGCTACGCTGAC
ACTACAACAATTCCAGGACATTATGTGATCTATTGGGAATTACTTACAAAAGACTCAAAT
AATTCTCCGAGTCAGGAGGTATTGAACAAATGTTGCTTGGCTATGGAAGAATCATTGAAT
TCAGTTTATCGACAGTGCAGAGTTGCAGATAATTCAATTGGACCATTGGAAATTAGAGTA
GTGGAAAAGGGAACATTTGAAGAGCTAATGGACTATGCAATTTCTAGGGGTGCATCTATA
AATCAGTACAAGACTCCTAGGTGCATCAATTTTACCCCTATCTTGGAACTACTAGACTCC
AGGGTAATTTCAGTGCACTTTAGTCCAACTGCTCCTCACTGGACCCCAGAACGACGACGT
TTACAAGTCTGA

Peptide Sequence

PEP ID

XP_016466293.1
PEP Infomation

PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Nicotiana tabacum]
Sequence

MAIATSTVSSPLGPPACEKDAKALQFIEEMTRNVDSVQKKVLAEILSRNANTEYLQRFKL
RGGTDRDTFKSKVPVVTYEEIQPDIQRIANGDRSPIFSSHPISEFLTSSGTSAGERKLMP
TIQEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFIKAETKTPGGLLARPVLTSYYKS
DQFKTRPYDPYNVYTSPNEAILCVDSFQSMYTQMLCGLLMREQVLRVGAVFASGLLRAIR
FLQINWQTLVKDIAFGTLNTRVSDPSIKECMSKILKPNPELAEFIIKECEGQNWEGIITR
IWPNTKYLDVIVTGAMAQYIPTLDYYSGGLPKACTMYASSECYFGLNLNPMCKPSEVCYT
IMPNMCYCEFIPHDPVNPATISRDSPPRLVDLADVELGKEYELVITTYAGLCRYRVGDIL
QVTGFHNSAPQFKFVRRKNVLLSIDSDKTDEAELQNAVENATQILRPYDTSVVEYTSYAD
TTTIPGHYVIYWELLTKDSNNSPSQEVLNKCCLAMEESLNSVYRQCRVADNSIGPLEIRV
VEKGTFEELMDYAISRGASINQYKTPRCINFTPILELLDSRVISVHFSPTAPHWTPERRR
LQV

Transcript Sequence

Gene sequence data has not been registered.